Blast

NCBI BLAST Server

The NCBI Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares a nucleotide or protein sequence database to an input set of sequences and calculates the statistical significance of each match. BLAST can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.

Regular BLAST includes five programs:

blastn - nucleotide sequence against nucleotide database
blastp - amino acid sequence against protein databaseStrongylocentrotus purpuratus
blastx - nucleotide (six-frame translation) sequence against protein database;
tblastn - protein sequence against nucleotide database (dynamically translated in all six reading frames).
tblastx - nucleotide (six-frame translation) sequence against nucleotide database (six-frame translations).

  • Strongylocentrotus purpuratus genome assembly 4.2
  • Strongylocentrotus purpuratus genome assembly 3.1
  • Strongylocentrotus purpuratus haplotype specific contigs 1.0
  • Strongylocentrotus purpuratus contigs assembly 3.1
  • Strongylocentrotus purpuratus genome assembly 0.5
  • Strongylocentrotus purpuratus Trancriptomes
  • Strongylocentrotus purpuratus RNA sequence peptides assembly
  • Strongylocentrotus purpuratus genes
  • Strongylocentrotus purpuratus peptide sequences
  • Strongylocentrotus purpuratus clone sequences

Patiria miniata genome available for BLAST

  • Patiria miniata genome assembly 2.0
  • Patiria miniata contigs 2.0
  • Patiria miniata genes 2.0
  • Patiria miniata proteins 2.0
  • Patiria miniata genome assembly 1.0
  • Patiria miniata contigs 1.0
  • Patiria miniata genes 1.0
  • Patiria miniata proteins 1.0
  • Patiria miniata RNA sequences

Lytechinus variegatus genome availble for BLAST

  • Lytechinus variegatus genome assembly 2.2
  • Lytechinus variegatus contigs 2.2
  • Lytechinus variegatus genes 2.2
  • Lytechinus variegatus proteins 2.2
  • Lytechinus variegatus genome assembly 0.4
  • Lytechinus variegatus RNA sequences

Parastichopus parvimensis Genome available for BLAST

  • Parastichopus parvimensis genome assembly 1.0
  • Parastichopus parvimensis contigs 1.0
  • Parastichopus parvimensis genes 1.0
  • Parastichopus parvimensis proteins 1.0
  • Parastichopus parvimensis Transcriptome - Gastrula stage
  • Parastichopus parvimensis Transcriptome - larval stage

Ophiothrix spiculata Genome(contigs)available for BLAST

  • Ophiothrix spiculata genome assembly 1.0
  • Ophiothrix spiculata contigs 1.0

Eucidaris tribuloides transcriptome available for BLAST

  • Eucidaris tribuloides assembly 1.0
  • Eucidaris tribuloides contigs 1.0
  • Eucidaris tribuloides transcripts